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Ok Let me explain using a question.
Suppose there are 2 capacitors A and B with capacitance C1 and C2 (C1>C2).Both are charged to voltage V and the same charged plates are connected to each other . This means that +ve plate of A is in touch with +ve plate of B AND -ve plate of A is in touch with -ve plate of B. Now we have to find the final charge on both the plates.

Let final charge ( in steady state ) on A be Q1 and on B be Q2.
Firstly, since net P.D. across a circuit is 0. From formula V=Q/C , we have V1 + V2 = 0 Q1/C1 - Q2/C2 = 0 ..........(going anticlockwise)....[1]
Now the +ve plate of A and the positive plate of B are an isolated system. So, initial and final sum of charges on both these plates will be same. So, C1V + C2V = Q1 + Q2
Only Q1 and Q2 are unknown and you have two equations, you can get their value. IF the final polarity of B plate comes out to be opposite, you will get value of Q2 as negative.
Hope this makes things clearer
Regards, Rooney
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